neuropoly / Domainadaptation
Licence: apache-2.0
Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".
Stars: ✭ 27
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python
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Segmentation Domain Adaptation for MRI
Repository for the Domain Adaptation work using the self-ensembling (mean teacher) for the domain adaptation of MRI images.
Installing requirements
Requirements for this project:
- (required) Python 3.6 (use a virtual environment);
- (required) Spinal Cord Toolbox(SCT)
- (required) medicaltorch
- (optional) FSLeyes/FSLview/FSLutils
These requirements are not included in the setup.py requirements, since
they aren't pip-installable, so you need to install them before
installing the project.
Documentation
All the documentatio is in Sphinx. First, create a Python 3.6 environment and then do:
~# git clone https://github.com/neuropoly/domainadaptation.git
~# cd domainadaptation
~# pip install -e .
~# cd docs
~# make html
The output HTML will be generated inside the docs/build/html folder.
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