Two-Stage Convolutional Neural Network for Breast Cancer Histology Image Classification. ICIAR 2018 Grand Challenge on BreAst Cancer Histology images (BACH)

✭ 149

python deep-learning pytorch classification image-classification medical-imaging

Applied Dl 2018

Tel-Aviv Deep Learning Boot-camp: 12 Applied Deep Learning Labs

✭ 146

python3 jupyter-notebook deep-learning pytorch keras medical-imaging pytorch-tutorial

Livianet

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

✭ 143

python deep-learning deep-neural-networks convolutional-neural-networks neural-networks cnn medical-imaging image-segmentation theano convolutional-networks deep-learning-algorithms neuroimaging

Segan

SegAN: Semantic Segmentation with Adversarial Learning

✭ 143

python semantic-segmentation medical-imaging adversarial-learning

Dicomviewer

DICOM Viewer in Nextcloud

✭ 139

javascript viewer medical-imaging nextcloud dicom

Kiu Net Pytorch

Official Pytorch Code of KiU-Net for Image Segmentation - MICCAI 2020 (Oral)

✭ 134

python deep-learning pytorch deep-neural-networks segmentation semantic-segmentation medical-imaging

Deep Histopath

A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge

✭ 132

jupyter-notebook deep-learning machine-learning medical-imaging

Ganspapercollection

✭ 130

deep-learning pytorch tensorflow keras generative-adversarial-network medical-imaging torch gans theano tensorlayer

Gate

Official public repository of Gate

✭ 129

medical-imaging physics-simulation

Awesome Gan For Medical Imaging

Awesome GAN for Medical Imaging

✭ 1,814

gan deeplearning generative-adversarial-network segmentation detection super-resolution medical-imaging registration reconstruction ct-denoising medical-image-synthesis

Rl Medical

Deep Reinforcement Learning (DRL) agents applied to medical images

✭ 123

python deep-learning machine-learning tensorflow neural-network reinforcement-learning deep-reinforcement-learning medical-imaging reproducibility

Covidprognosis

COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations

✭ 120

python deep-learning pytorch medical-imaging

Mirtk

The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at

✭ 119

image-processing toolkit medical-imaging

Cornerstone

JavaScript library to display interactive medical images including but not limited to DICOM

✭ 1,690

javascript HTML typescript shell medical-imaging dicom nci-itcr cornerstone

Viewers

The OHIF Medical Imaging Viewer is for viewing medical images. It can retrieve and load images from most sources and formats; render sets in 2D, 3D, and reconstructed representations; allows for the manipulation, annotation, and serialization of observations; supports internationalization, OpenID Connect, offline use, hotkeys, and many more features.

✭ 1,753

javascript stylus CSS HTML hacktoberfest reactjs medical-imaging dicom image-analysis quantitative-imaging imaging-informatics cancer-imaging-research medical-image-processing nci-itcr nci-qin

Mne Cpp

MNE-CPP: A Framework for Electrophysiology

✭ 104

machine-learning visualization cross-platform qt real-time analysis medical-imaging signal-processing neuroscience healthcare eeg

Models

DLTK Model Zoo

✭ 101

jupyter-notebook deep-learning machine-learning data-science deep-neural-networks cnn medical-imaging models medical

Dicom Server

OSS Implementation of DICOMweb standard

✭ 101

azure medical-imaging dicom healthcare

Deep Learning Drizzle

Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!

Deep Learning For Medical Applications

Deep Learning Papers on Medical Image Analysis

✭ 1,299

deep-learning awesome-list tex medical-imaging

Grand Challenge.org

A platform for end-to-end development of machine learning solutions in biomedical imaging

✭ 89

python machine-learning docker computer-vision django ai django-rest-framework medical-imaging reproducible-research

Niftynet

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

✭ 1,276

python python3 python2 deep-learning tensorflow neural-network deep-neural-networks convolutional-neural-networks gan segmentation distributed ml medical-imaging autoencoder pip

Awesome Medical Imaging

Awesome list of software that I use to do research in medical imaging.

✭ 87

deep-learning machine-learning computer-vision image-processing neural-networks medical-imaging

Vnet Tensorflow

Tensorflow implementation of the V-Net architecture for medical imaging segmentation.

✭ 84

python deep-learning tensorflow segmentation medical-imaging

Starviewer

Starviewer, a cross-platform open source medical imaging software

✭ 83

cpp 3d qt sqlite 2d viewer medical-imaging multi-platform dicom gplv3 medical

X Ray Classification

X-ray Images (Chest images) analysis and anomaly detection using Transfer learning with inception v2

✭ 83

python deep-learning tensorflow image-processing deep-neural-networks classification medical-imaging vgg

Dltk

Deep Learning Toolkit for Medical Image Analysis

✭ 1,249

python deep-learning machine-learning tensorflow data-science neural-network deep-neural-networks neural-networks cnn ml medical-imaging medical neuroimaging

Adn

ADN: Artifact Disentanglement Network for Unsupervised Metal Artifact Reduction

✭ 81

python deep-learning deep-neural-networks medical-imaging

Quicknat pytorch

PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty

✭ 74

python deep-learning machine-learning pytorch computer-vision ai convolutional-neural-networks segmentation medical-imaging bayesian

Kaggle Rsna

Deep Learning for Automatic Pneumonia Detection, RSNA challenge

✭ 74

python deep-learning machine-learning image-processing object-detection neural-networks classification detection medical-imaging

Odil

Odil is a C++11 library for the DICOM standard

✭ 69

python medical-imaging dicom

Cnn Interpretability

🏥 Visualizing Convolutional Networks for MRI-based Diagnosis of Alzheimer’s Disease

✭ 68

jupyter-notebook deep-learning machine-learning convolutional-neural-networks cnn medical-imaging interpretability

Dwv

DICOM Web Viewer: open source zero footprint medical image viewer.

✭ 1,145

javascript viewer medical-imaging dicom

Pneumonia Detection From Chest X Ray Images With Deep Learning

Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models

✭ 64

jupyter-notebook tensorflow keras convolutional-neural-networks imagenet medical-imaging image-recognition keras-tensorflow inception

Data Science Bowl 2018

End-to-end one-class instance segmentation based on U-Net architecture for Data Science Bowl 2018 in Kaggle

✭ 56

python deep-learning tensorflow computer-vision convolutional-neural-networks cnn segmentation kaggle medical-imaging instance-segmentation unet competition

Medical Imaging Datasets

A list of Medical imaging datasets.

✭ 1,068

medical-imaging

Deepbrain

Deep Learning tools for brain medical images

✭ 51

python deep-learning machine-learning tensorflow artificial-intelligence neural-networks medical-imaging

Lightning Covid19

Classification for covid-19 chest X-ray images using Lightning

✭ 49

python pytorch classification medical-imaging

Itkexamples

Cookbook examples for the Insight Toolkit documented with Sphinx

✭ 38

python cpp open-source documentation scientific-computing medical-imaging reproducible-research image-analysis open-science

Extensionsindex

Slicer extensions index

✭ 36

python cross-platform image-processing qt segmentation medical-imaging registration neuroimaging

Segment Open

Segment Source Distribution

✭ 34

matlab plugin image-processing segmentation plugins medical-imaging medical image-analysis

Rivuletpy

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

✭ 32

python image-processing tracing medical-imaging

Projectweek

Website for NA-MIC Project Weeks

✭ 31

python open-source medical-imaging reproducible-research hackathon

1-60 of 176 medical-imaging projects

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